PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G025100.1
Common NameB456_008G025100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 319aa    MW: 35178.6 Da    PI: 9.6888
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G025100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20163212255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+  ++g
  Gorai.008G025100.1 163 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFNTAEEAARAYDKAAIDFRG 212
                         59*******.**********82....48**********************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.84E-34162220No hitNo description
PROSITE profilePS5103225.146163220IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22163221IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-33163220IPR001471AP2/ERF domain
PfamPF008472.7E-14163212IPR001471AP2/ERF domain
SMARTSM003806.9E-40163226IPR001471AP2/ERF domain
PRINTSPR003673.2E-12164175IPR001471AP2/ERF domain
PRINTSPR003673.2E-12186202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKGKWKTRVQ CTTPNKVRDF SQFTSTSLSR LHRDLSRLRR RLMSPPPPPL HPLSSEQEIS  60
VMVSTLKNVI TGSTPSSSSA DLRFDFGAPG GSASTFTGGF NADRGNMVFQ VSEVLDKCHV  120
CKFDGCLGCN LFPPSQQEEK KGTTSATTTT SAIKTKTKRV KKNYRGVRQR PWGKWAAEIR  180
DPRRATRVWL GTFNTAEEAA RAYDKAAIDF RGPRAKLNFP FPDSNSKADV IPPPPAAATA  240
VGFDHEISTR SVQKEKERND VISMEMDTEK GLGSTEFWDA IGEDEIQQWM MTMSEFGGDS  300
YSSDSATTTV TTGNVHTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22162221161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7139090.0KC713909.1 Gossypium hirsutum ethylene-responsive transcription factor 10 (ERF10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436197.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A0D2R7R80.0A0A0D2R7R8_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-31redox responsive transcription factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]